I guess how you stop depends on the situation and personal preferenceBefore I slow down for a stop should I hold the clutch in and brake and keep the clutch held in, while I wait? My left hand got tired fast.

When going downhill use the engine brake. Depending how steep the mountain is you`ll get too fast riding in 4th or 5th gear so ride in a lower and be careful on the brakes. Do not disengage the clutch that`s one of the worst things to do downhill.-There is a barnett clutch and I'm also not sure what to do going downhill, should the clutch and brakes be on or just brakes?
No wonder with that high idleWhen I put it into first, it shoots off pretty fast it feels like with a tiny bit of throttle.

I guess another thing to ask the last owner is when the fork was serviced. Maybe you`ll need to change the oil or check the oil level. (how do the dust seals of the fork look, are they full or cracks ? Also when you compress and decompress the fork a few times, is there oil on the stanchion (the chromed) tubes ? Of course a fork needs to dive in a bit during brakeing. If it wouldn`t the front tire would start slipping.-When I am going very slow and press in the brake the font dips down, is that normal? If I just press lightly than it will not, especially when I'm going faster.
The clock is the only thing using the battery while parked and it will not suck the battery dry in a day or two. The problem when doing short trips is rather that the cranking takes more energy than the generator can recharge in that short time. Imho the clock is the least problem.I only rode for about 30 min. I unhooked the battery when I got off, will that save the charge? I am waiting for a couple days until my battery tender arrives.
That`s not good. Seems that idle is almost 4x as high as it should be. Also the clutch not completely disengaging shows something is not totally right. I wonder if the past owner swapped the clutch springs with stronger ones. Is the engine pulling also in idle or only when in gear and the clutch is held in ? If it`s the later it may just be air in the clutch line.Actually, when the engine warmed up it stayed at 4000 and almost sounds like it is racing when I have the clutch in and no throttle. I have to hold the brakes in or it will keep going, like on my old car going in reverse. Is this bad?
On some bikes the fuel gauge works on some it`s rather jumpy. I used to remove the gas cap and take a look when waiting at a traffic light.The gauge keeps going up and down as I drive, like when I slow down the needle goes down and stuff. Is this a big issue or can I just check inside to see gas level?

It depends on how bad it is. There`s a lot of air going through your engine. If the exhaust is badly dented the flow of the exhaust gas is restricted which can impact the whole carburation on that cylinder. Simply spoken.-Why is the dent in the side bad? What will that affect?